[INFO] cloning repository https://github.com/zhanif3/701
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zhanif3/701" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzhanif3%2F701", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzhanif3%2F701'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 04144afb7cf245596996350a6d5f8fa6eed1b886
[INFO] checking zhanif3/701 against master#dc375db7d8df0aa450e622c529147c95eee756f5 for pr-156749
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzhanif3%2F701" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/zhanif3/701
[INFO] finished tweaking git repo https://github.com/zhanif3/701
[INFO] tweaked toml for git repo https://github.com/zhanif3/701 written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/zhanif3/701 on toolchain dc375db7d8df0aa450e622c529147c95eee756f5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dc375db7d8df0aa450e622c529147c95eee756f5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/zhanif3/701 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+dc375db7d8df0aa450e622c529147c95eee756f5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded proc-macro2 v0.4.28
[INFO] [stderr]   Downloaded serde v1.0.90
[INFO] [stderr]   Downloaded quote v0.6.12
[INFO] [stderr]   Downloaded serde_derive v1.0.90
[INFO] [stderr]   Downloaded cast v0.2.2
[INFO] [stderr]   Downloaded unicode-width v0.1.5
[INFO] [stderr]   Downloaded memchr v2.2.0
[INFO] [stderr]   Downloaded atty v0.2.11
[INFO] [stderr]   Downloaded cfg-if v0.1.7
[INFO] [stderr]   Downloaded num_cpus v1.10.0
[INFO] [stderr]   Downloaded utf8-ranges v1.0.2
[INFO] [stderr]   Downloaded thread_local v0.3.6
[INFO] [stderr]   Downloaded multimap v0.4.0
[INFO] [stderr]   Downloaded bit-set v0.5.1
[INFO] [stderr]   Downloaded redox_syscall v0.1.54
[INFO] [stderr]   Downloaded either v1.5.2
[INFO] [stderr]   Downloaded byteorder v1.3.1
[INFO] [stderr]   Downloaded numtoa v0.1.0
[INFO] [stderr]   Downloaded redox_termios v0.1.1
[INFO] [stderr]   Downloaded itoa v0.4.3
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded lazy_static v1.3.0
[INFO] [stderr]   Downloaded winapi-util v0.1.2
[INFO] [stderr]   Downloaded same-file v1.0.4
[INFO] [stderr]   Downloaded quick-error v1.2.2
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rawpointer v0.1.0
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded bytecount v0.3.2
[INFO] [stderr]   Downloaded vec_map v0.8.1
[INFO] [stderr]   Downloaded rand_xoshiro v0.1.0
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded criterion-plot v0.3.1
[INFO] [stderr]   Downloaded matrixmultiply v0.1.15
[INFO] [stderr]   Downloaded csv-core v0.1.5
[INFO] [stderr]   Downloaded termion v1.5.2
[INFO] [stderr]   Downloaded ucd-util v0.1.3
[INFO] [stderr]   Downloaded bit-vec v0.5.1
[INFO] [stderr]   Downloaded walkdir v2.2.7
[INFO] [stderr]   Downloaded tinytemplate v1.0.1
[INFO] [stderr]   Downloaded num-complex v0.2.1
[INFO] [stderr]   Downloaded bio-types v0.5.1
[INFO] [stderr]   Downloaded bincode v1.1.3
[INFO] [stderr]   Downloaded ryu v0.2.7
[INFO] [stderr]   Downloaded num-traits v0.2.6
[INFO] [stderr]   Downloaded aho-corasick v0.7.3
[INFO] [stderr]   Downloaded bv v0.10.0
[INFO] [stderr]   Downloaded syn v0.15.33
[INFO] [stderr]   Downloaded serde_json v1.0.39
[INFO] [stderr]   Downloaded itertools v0.8.0
[INFO] [stderr]   Downloaded itertools v0.7.11
[INFO] [stderr]   Downloaded criterion v0.2.11
[INFO] [stderr]   Downloaded bio v0.25.0
[INFO] [stderr]   Downloaded clap v2.33.0
[INFO] [stderr]   Downloaded ndarray v0.12.1
[INFO] [stderr]   Downloaded statrs v0.9.0
[INFO] [stderr]   Downloaded regex-syntax v0.6.6
[INFO] [stderr]   Downloaded regex v1.1.6
[INFO] [stderr]   Downloaded libc v0.2.53
[INFO] [stderr]   Downloaded csv v1.0.7
[INFO] [stderr]   Downloaded winapi v0.3.7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3e793bdf10248eb2ddbd6b0faebed8155c11b4589982e2893733958d93e8d540" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 7604da3d1152510086dfb9c89be7040660e6b04fb2c252fac4b251233e1b794b
[INFO] running `Command { std: "docker" "start" "7604da3d1152510086dfb9c89be7040660e6b04fb2c252fac4b251233e1b794b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7604da3d1152510086dfb9c89be7040660e6b04fb2c252fac4b251233e1b794b" "/opt/rustwide/cargo-home/bin/cargo" "+dc375db7d8df0aa450e622c529147c95eee756f5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7604da3d1152510086dfb9c89be7040660e6b04fb2c252fac4b251233e1b794b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7604da3d1152510086dfb9c89be7040660e6b04fb2c252fac4b251233e1b794b" "/opt/rustwide/cargo-home/bin/cargo" "+dc375db7d8df0aa450e622c529147c95eee756f5" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.53
[INFO] [stderr]    Compiling proc-macro2 v0.4.28
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling syn v0.15.33
[INFO] [stderr]    Compiling serde v1.0.90
[INFO] [stderr]    Compiling num-traits v0.2.6
[INFO] [stderr]     Checking lazy_static v1.3.0
[INFO] [stderr]    Compiling memchr v2.2.0
[INFO] [stderr]    Compiling byteorder v1.3.1
[INFO] [stderr]    Compiling ryu v0.2.7
[INFO] [stderr]     Checking either v1.5.2
[INFO] [stderr]    Compiling arrayvec v0.4.10
[INFO] [stderr]     Checking nodrop v0.1.13
[INFO] [stderr]     Checking cfg-if v0.1.7
[INFO] [stderr]     Checking memoffset v0.2.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rayon-core v1.4.1
[INFO] [stderr]     Checking itoa v0.4.3
[INFO] [stderr]     Checking scopeguard v0.3.3
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]     Checking ucd-util v0.1.3
[INFO] [stderr]     Checking crossbeam-utils v0.2.2
[INFO] [stderr]    Compiling num-complex v0.2.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling regex v1.1.6
[INFO] [stderr]     Checking regex-syntax v0.6.6
[INFO] [stderr]     Checking thread_local v0.3.6
[INFO] [stderr]    Compiling num-integer v0.1.39
[INFO] [stderr]     Checking utf8-ranges v1.0.2
[INFO] [stderr]    Compiling autocfg v0.1.2
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking rawpointer v0.1.0
[INFO] [stderr]    Compiling rayon v1.0.3
[INFO] [stderr]     Checking itertools v0.7.11
[INFO] [stderr]    Compiling bio v0.25.0
[INFO] [stderr]     Checking quick-error v1.2.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling bincode v1.1.3
[INFO] [stderr]    Compiling quote v0.6.12
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]     Checking bytecount v0.3.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking fnv v1.0.6
[INFO] [stderr]     Checking crossbeam-epoch v0.3.1
[INFO] [stderr]     Checking rand_core v0.4.0
[INFO] [stderr]     Checking unicode-width v0.1.5
[INFO] [stderr]     Checking itertools v0.8.0
[INFO] [stderr]     Checking bitflags v1.0.4
[INFO] [stderr]     Checking same-file v1.0.4
[INFO] [stderr]     Checking cast v0.2.2
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking bit-set v0.5.1
[INFO] [stderr]     Checking num_cpus v1.10.0
[INFO] [stderr]     Checking rand v0.4.6
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking atty v0.2.11
[INFO] [stderr]     Checking walkdir v2.2.7
[INFO] [stderr]     Checking rand_core v0.3.1
[INFO] [stderr]     Checking rand_os v0.1.3
[INFO] [stderr]     Checking clap v2.33.0
[INFO] [stderr]     Checking rand_xoshiro v0.1.0
[INFO] [stderr]     Checking csv-core v0.1.5
[INFO] [stderr]     Checking aho-corasick v0.7.3
[INFO] [stderr]     Checking crossbeam-deque v0.2.0
[INFO] [stderr]     Checking rand v0.3.23
[INFO] [stderr]     Checking statrs v0.9.0
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking criterion-plot v0.3.1
[INFO] [stderr]    Compiling serde_derive v1.0.90
[INFO] [stderr]     Checking csv v1.0.7
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking serde_json v1.0.39
[INFO] [stderr]     Checking tinytemplate v1.0.1
[INFO] [stderr]     Checking criterion v0.2.11
[INFO] [stderr]     Checking bwt v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `crate::types::Suffix`
[INFO] [stdout]  --> src/common/search.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use crate::types::Suffix;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::suffix_array`
[INFO] [stdout]  --> src/common/search.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use crate::suffix_array;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around assigned value
[INFO] [stdout]   --> src/common/search.rs:36:31
[INFO] [stdout]    |
[INFO] [stdout] 36 |             let offset_char = ((first_rows.first().unwrap().1).0);
[INFO] [stdout]    |                               ^                                 ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 36 -             let offset_char = ((first_rows.first().unwrap().1).0);
[INFO] [stdout] 36 +             let offset_char = (first_rows.first().unwrap().1).0;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::IntoParallelRefIterator`
[INFO] [stdout]  --> src/common/suffix_array.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use rayon::iter::IntoParallelRefIterator;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BufRead`, `BufReader`, and `Result`
[INFO] [stdout]   --> src/common/suffix_array.rs:12:15
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::{BufRead, BufReader, Result};
[INFO] [stdout]    |               ^^^^^^^  ^^^^^^^^^  ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/common/suffix_array.rs:14:17
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/common/suffix_array.rs:17:10
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Serialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/common/suffix_array.rs:17:21
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |                     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Deserialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around type
[INFO] [stdout]   --> src/common/suffix_array.rs:45:20
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let mut s: Vec<(Suffix)> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout]    |                    ^      ^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 45 -     let mut s: Vec<(Suffix)> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout] 45 +     let mut s: Vec<Suffix> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: `#[macro_use]` attribute cannot be used on use statements
[INFO] [stdout]  --> src/common/search.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]   = help: `#[macro_use]` can be applied to crates, extern crates, and modules
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::types::Suffix`
[INFO] [stdout]  --> src/common/search.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use crate::types::Suffix;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::suffix_array`
[INFO] [stdout]  --> src/common/search.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use crate::suffix_array;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around assigned value
[INFO] [stdout]   --> src/common/search.rs:36:31
[INFO] [stdout]    |
[INFO] [stdout] 36 |             let offset_char = ((first_rows.first().unwrap().1).0);
[INFO] [stdout]    |                               ^                                 ^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 36 -             let offset_char = ((first_rows.first().unwrap().1).0);
[INFO] [stdout] 36 +             let offset_char = (first_rows.first().unwrap().1).0;
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::IntoParallelRefIterator`
[INFO] [stdout]  --> src/common/suffix_array.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use rayon::iter::IntoParallelRefIterator;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BufRead`, `BufReader`, and `Result`
[INFO] [stdout]   --> src/common/suffix_array.rs:12:15
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::{BufRead, BufReader, Result};
[INFO] [stdout]    |               ^^^^^^^  ^^^^^^^^^  ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/common/suffix_array.rs:14:17
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/common/suffix_array.rs:17:10
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Serialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition value: `cargo-clippy`
[INFO] [stdout]   --> src/common/suffix_array.rs:17:21
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |                     ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: no expected values for `feature`
[INFO] [stdout]    = note: using a cfg inside a derive macro will use the cfgs from the destination crate and not the ones from the defining crate
[INFO] [stdout]    = help: try referring to `Deserialize` crate for guidance on how handle this unexpected cfg
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around type
[INFO] [stdout]   --> src/common/suffix_array.rs:45:20
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let mut s: Vec<(Suffix)> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout]    |                    ^      ^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 45 -     let mut s: Vec<(Suffix)> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout] 45 +     let mut s: Vec<Suffix> = (0 .. t.len()).map(|x: usize| {
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: `#[macro_use]` attribute cannot be used on use statements
[INFO] [stdout]  --> src/common/search.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]   = help: `#[macro_use]` can be applied to crates, extern crates, and modules
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `start`
[INFO] [stdout]   --> src/common/search.rs:45:9
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let mut start: usize;
[INFO] [stdout]    |         ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_start`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `end`
[INFO] [stdout]   --> src/common/search.rs:46:9
[INFO] [stdout]    |
[INFO] [stdout] 46 |     let mut end: usize;
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `x`
[INFO] [stdout]   --> src/common/search.rs:58:18
[INFO] [stdout]    |
[INFO] [stdout] 58 |             Some(x) => (),
[INFO] [stdout]    |                  ^ help: if this is intentional, prefix it with an underscore: `_x`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `c`
[INFO] [stdout]   --> src/common/search.rs:64:26
[INFO] [stdout]    |
[INFO] [stdout] 64 |                     Some(c) => (),
[INFO] [stdout]    |                          ^ help: if this is intentional, prefix it with an underscore: `_c`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]   --> src/common/suffix_array.rs:49:12
[INFO] [stdout]    |
[INFO] [stdout] 49 |         Ok(elapsed) => {
[INFO] [stdout]    |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/common/suffix_array.rs:53:13
[INFO] [stdout]    |
[INFO] [stdout] 53 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]   --> src/common/suffix_array.rs:63:12
[INFO] [stdout]    |
[INFO] [stdout] 63 |         Ok(elapsed) => {
[INFO] [stdout]    |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/common/suffix_array.rs:67:13
[INFO] [stdout]    |
[INFO] [stdout] 67 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/common/suffix_array.rs:82:9
[INFO] [stdout]    |
[INFO] [stdout] 82 |     for i in 0 .. index.len() {
[INFO] [stdout]    |         ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `start`
[INFO] [stdout]   --> src/common/search.rs:45:9
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let mut start: usize;
[INFO] [stdout]    |         ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_start`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:130:12
[INFO] [stdout]     |
[INFO] [stdout] 130 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `end`
[INFO] [stdout]   --> src/common/search.rs:46:9
[INFO] [stdout]    |
[INFO] [stdout] 46 |     let mut end: usize;
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:134:13
[INFO] [stdout]     |
[INFO] [stdout] 134 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `x`
[INFO] [stdout]   --> src/common/search.rs:58:18
[INFO] [stdout]    |
[INFO] [stdout] 58 |             Some(x) => (),
[INFO] [stdout]    |                  ^ help: if this is intentional, prefix it with an underscore: `_x`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `c`
[INFO] [stdout]   --> src/common/search.rs:64:26
[INFO] [stdout]    |
[INFO] [stdout] 64 |                     Some(c) => (),
[INFO] [stdout]    |                          ^ help: if this is intentional, prefix it with an underscore: `_c`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:154:12
[INFO] [stdout]     |
[INFO] [stdout] 154 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:158:13
[INFO] [stdout]     |
[INFO] [stdout] 158 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:169:12
[INFO] [stdout]     |
[INFO] [stdout] 169 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:173:13
[INFO] [stdout]     |
[INFO] [stdout] 173 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Counts` should have a snake case name
[INFO] [stdout]   --> src/common/search.rs:43:70
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn search(query: &str, zipped: &Vec<(&Nucleotide, &Nucleotide)>, Counts: &HashMap<u8, usize>) -> Option<(usize, usize)> {
[INFO] [stdout]    |                                                                      ^^^^^^ help: convert the identifier to snake case (notice the capitalization): `counts`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Counts` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:103:68
[INFO] [stdout]     |
[INFO] [stdout] 103 | fn get_pos_from_vec(rows: &Vec<&(&(char, usize), &(char, usize))>, Counts: &HashMap<u8, usize>) -> Option<(usize, usize)> {
[INFO] [stdout]     |                                                                    ^^^^^^ help: convert the identifier to snake case (notice the capitalization): `counts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `L` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub L: Vec<Nucleotide>,
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `F` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:21:9
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub F: Vec<Nucleotide>, // Character,
[INFO] [stdout]    |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `Index` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:22:9
[INFO] [stdout]    |
[INFO] [stdout] 22 |     pub Index: HashMap<Nucleotide, Nucleotide>,
[INFO] [stdout]    |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `FCounts` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:23:9
[INFO] [stdout]    |
[INFO] [stdout] 23 |     pub FCounts: HashMap<u8, usize>,
[INFO] [stdout]    |         ^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `fcounts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/common/suffix_array.rs:17:10
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |          ^--------
[INFO] [stdout]    |          |
[INFO] [stdout]    |          `Serialize` is not local
[INFO] [stdout]    |          move the `impl` block outside of this constant `_IMPL_SERIALIZE_FOR_LF`
[INFO] [stdout] 18 | //#[derive(Debug)]
[INFO] [stdout] 19 | pub struct LF {
[INFO] [stdout]    |            -- `LF` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Serialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/common/suffix_array.rs:17:21
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |                     ^----------
[INFO] [stdout]    |                     |
[INFO] [stdout]    |                     `Deserialize` is not local
[INFO] [stdout]    |                     move the `impl` block outside of this constant `_IMPL_DESERIALIZE_FOR_LF`
[INFO] [stdout] 18 | //#[derive(Debug)]
[INFO] [stdout] 19 | pub struct LF {
[INFO] [stdout]    |            -- `LF` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Deserialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/common/suffix_array.rs:43:24
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn suffix_array(t: &str) -> Vec<Suffix> {
[INFO] [stdout]    |                        ^^^^         ^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                        |
[INFO] [stdout]    |                        the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn suffix_array(t: &str) -> Vec<Suffix<'_>> {
[INFO] [stdout]    |                                           ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:121:9
[INFO] [stdout]     |
[INFO] [stdout] 121 |     let F: Vec<Nucleotide> = sa.iter().enumerate().map(|suffix| {
[INFO] [stdout]     |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:141:9
[INFO] [stdout]     |
[INFO] [stdout] 141 |     let L: Vec<Nucleotide> = sa.iter().map(|suffix| {
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Index` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:165:9
[INFO] [stdout]     |
[INFO] [stdout] 165 |     let Index: HashMap<Nucleotide, Nucleotide> = (0 .. t.len()).into_par_iter().map(|i| {
[INFO] [stdout]     |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]   --> src/common/suffix_array.rs:49:12
[INFO] [stdout]    |
[INFO] [stdout] 49 |         Ok(elapsed) => {
[INFO] [stdout]    |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/common/suffix_array.rs:53:13
[INFO] [stdout]    |
[INFO] [stdout] 53 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]   --> src/common/suffix_array.rs:63:12
[INFO] [stdout]    |
[INFO] [stdout] 63 |         Ok(elapsed) => {
[INFO] [stdout]    |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/common/suffix_array.rs:67:13
[INFO] [stdout]    |
[INFO] [stdout] 67 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/common/suffix_array.rs:82:9
[INFO] [stdout]    |
[INFO] [stdout] 82 |     for i in 0 .. index.len() {
[INFO] [stdout]    |         ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:130:12
[INFO] [stdout]     |
[INFO] [stdout] 130 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:134:13
[INFO] [stdout]     |
[INFO] [stdout] 134 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:154:12
[INFO] [stdout]     |
[INFO] [stdout] 154 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:158:13
[INFO] [stdout]     |
[INFO] [stdout] 158 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `elapsed`
[INFO] [stdout]    --> src/common/suffix_array.rs:169:12
[INFO] [stdout]     |
[INFO] [stdout] 169 |         Ok(elapsed) => {
[INFO] [stdout]     |            ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_elapsed`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]    --> src/common/suffix_array.rs:173:13
[INFO] [stdout]     |
[INFO] [stdout] 173 |         Err(e) => {
[INFO] [stdout]     |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `test_search_capabilities_partial` is never used
[INFO] [stdout]    --> src/common/search.rs:189:8
[INFO] [stdout]     |
[INFO] [stdout] 189 |     fn test_search_capabilities_partial() {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Counts` should have a snake case name
[INFO] [stdout]   --> src/common/search.rs:43:70
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn search(query: &str, zipped: &Vec<(&Nucleotide, &Nucleotide)>, Counts: &HashMap<u8, usize>) -> Option<(usize, usize)> {
[INFO] [stdout]    |                                                                      ^^^^^^ help: convert the identifier to snake case (notice the capitalization): `counts`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Counts` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:103:68
[INFO] [stdout]     |
[INFO] [stdout] 103 | fn get_pos_from_vec(rows: &Vec<&(&(char, usize), &(char, usize))>, Counts: &HashMap<u8, usize>) -> Option<(usize, usize)> {
[INFO] [stdout]     |                                                                    ^^^^^^ help: convert the identifier to snake case (notice the capitalization): `counts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:134:13
[INFO] [stdout]     |
[INFO] [stdout] 134 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:146:13
[INFO] [stdout]     |
[INFO] [stdout] 146 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:158:13
[INFO] [stdout]     |
[INFO] [stdout] 158 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:169:13
[INFO] [stdout]     |
[INFO] [stdout] 169 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:180:13
[INFO] [stdout]     |
[INFO] [stdout] 180 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/search.rs:190:13
[INFO] [stdout]     |
[INFO] [stdout] 190 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `L` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:20:9
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub L: Vec<Nucleotide>,
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `F` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:21:9
[INFO] [stdout]    |
[INFO] [stdout] 21 |     pub F: Vec<Nucleotide>, // Character,
[INFO] [stdout]    |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `Index` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:22:9
[INFO] [stdout]    |
[INFO] [stdout] 22 |     pub Index: HashMap<Nucleotide, Nucleotide>,
[INFO] [stdout]    |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: structure field `FCounts` should have a snake case name
[INFO] [stdout]   --> src/common/suffix_array.rs:23:9
[INFO] [stdout]    |
[INFO] [stdout] 23 |     pub FCounts: HashMap<u8, usize>,
[INFO] [stdout]    |         ^^^^^^^ help: convert the identifier to snake case (notice the capitalization): `fcounts`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/common/suffix_array.rs:17:10
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |          ^--------
[INFO] [stdout]    |          |
[INFO] [stdout]    |          `Serialize` is not local
[INFO] [stdout]    |          move the `impl` block outside of this constant `_IMPL_SERIALIZE_FOR_LF`
[INFO] [stdout] 18 | //#[derive(Debug)]
[INFO] [stdout] 19 | pub struct LF {
[INFO] [stdout]    |            -- `LF` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Serialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Serialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: `#[warn(non_local_definitions)]` on by default
[INFO] [stdout]    = note: this warning originates in the derive macro `Serialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item
[INFO] [stdout]   --> src/common/suffix_array.rs:17:21
[INFO] [stdout]    |
[INFO] [stdout] 17 | #[derive(Serialize, Deserialize, PartialEq, Debug)]
[INFO] [stdout]    |                     ^----------
[INFO] [stdout]    |                     |
[INFO] [stdout]    |                     `Deserialize` is not local
[INFO] [stdout]    |                     move the `impl` block outside of this constant `_IMPL_DESERIALIZE_FOR_LF`
[INFO] [stdout] 18 | //#[derive(Debug)]
[INFO] [stdout] 19 | pub struct LF {
[INFO] [stdout]    |            -- `LF` is not local
[INFO] [stdout]    |
[INFO] [stdout]    = note: the derive macro `Deserialize` defines the non-local `impl`, and may need to be changed
[INFO] [stdout]    = note: the derive macro `Deserialize` may come from an old version of the `serde_derive` crate, try updating your dependency with `cargo update -p serde_derive`
[INFO] [stdout]    = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl`
[INFO] [stdout]    = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint
[INFO] [stdout]    = note: this warning originates in the derive macro `Deserialize` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/common/suffix_array.rs:43:24
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn suffix_array(t: &str) -> Vec<Suffix> {
[INFO] [stdout]    |                        ^^^^         ^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                        |
[INFO] [stdout]    |                        the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 43 | pub fn suffix_array(t: &str) -> Vec<Suffix<'_>> {
[INFO] [stdout]    |                                           ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:121:9
[INFO] [stdout]     |
[INFO] [stdout] 121 |     let F: Vec<Nucleotide> = sa.iter().enumerate().map(|suffix| {
[INFO] [stdout]     |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:141:9
[INFO] [stdout]     |
[INFO] [stdout] 141 |     let L: Vec<Nucleotide> = sa.iter().map(|suffix| {
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Index` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:165:9
[INFO] [stdout]     |
[INFO] [stdout] 165 |     let Index: HashMap<Nucleotide, Nucleotide> = (0 .. t.len()).into_par_iter().map(|i| {
[INFO] [stdout]     |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:200:13
[INFO] [stdout]     |
[INFO] [stdout] 200 |         let T = "ABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/common/suffix_array.rs:210:13
[INFO] [stdout]     |
[INFO] [stdout] 210 |         let T = "ABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABAABA$";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/search_client.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/search_client.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]  --> src/bin/search_client.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::io::Read;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> src/bin/search_client.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]  --> src/bin/search_client.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]  --> src/bin/search_client.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::iter::repeat;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/bin/search_client.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/search_client.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/search_client.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/search_client.rs:16:44
[INFO] [stdout]    |
[INFO] [stdout] 16 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/main.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Deserialize` and `Serialize`
[INFO] [stdout]  --> src/bin/main.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use serde::{Serialize, Deserialize};
[INFO] [stdout]   |             ^^^^^^^^^  ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]  --> src/benches/my_benchmark.rs:9:44
[INFO] [stdout]   |
[INFO] [stdout] 9 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]   |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::sync::Arc`
[INFO] [stdout]   --> src/benches/my_benchmark.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::sync::Arc;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]   --> src/bin/main.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::io::Read;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/main.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/bin/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/main.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/main.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/main.rs:20:44
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/main.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/bin/search_client.rs:24:9
[INFO] [stdout]    |
[INFO] [stdout] 24 |     let mut lf_buffer = fs::read("lf.bincode")?;
[INFO] [stdout]    |         ----^^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `original_string`
[INFO] [stdout]   --> src/bin/main.rs:80:9
[INFO] [stdout]    |
[INFO] [stdout] 80 |     let original_string = common::suffix_array::reverse_bwt(&lf.Index);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_original_string`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `g`
[INFO] [stdout]    --> src/bin/main.rs:108:9
[INFO] [stdout]     |
[INFO] [stdout] 108 |     let g = bincode::serialize_into(&mut lf_buffer, &lf);
[INFO] [stdout]     |         ^ help: if this is intentional, prefix it with an underscore: `_g`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `suffix_strings`
[INFO] [stdout]    --> src/bin/main.rs:131:9
[INFO] [stdout]     |
[INFO] [stdout] 131 |     let suffix_strings: Vec<&str> = (positions.1).iter().map(|x| {
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_suffix_strings`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/main.rs:36:9
[INFO] [stdout]    |
[INFO] [stdout] 36 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/main.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Deserialize` and `Serialize`
[INFO] [stdout]  --> src/bin/main.rs:5:13
[INFO] [stdout]   |
[INFO] [stdout] 5 | use serde::{Serialize, Deserialize};
[INFO] [stdout]   |             ^^^^^^^^^  ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/main.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]   --> src/bin/main.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::io::Read;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/main.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/bin/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/main.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/main.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/main.rs:20:44
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/main.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/bin/main.rs:109:5
[INFO] [stdout]     |
[INFO] [stdout] 109 |     lf_buffer.flush();
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 109 |     let _ = lf_buffer.flush();
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/search_client.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/search_client.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]  --> src/bin/search_client.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::io::Read;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> src/bin/search_client.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]  --> src/bin/search_client.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]  --> src/bin/search_client.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::iter::repeat;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/bin/search_client.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/search_client.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/search_client.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/search_client.rs:16:44
[INFO] [stdout]    |
[INFO] [stdout] 16 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::io::Read;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::io::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::iter::repeat;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bwt_rosalind.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::collections::HashSet;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/bwt_rosalind.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::prelude::*;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::borrow::Borrow`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::borrow::Borrow;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:15:17
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `IntoParallelRefIterator` and `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:20:19
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                   ^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Duration` and `SystemTime`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^  ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: `#[macro_use]` attribute cannot be used on use statements
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]   = help: `#[macro_use]` can be applied to crates, extern crates, and modules
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/bwt_rosalind.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/bwt_rosalind.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::prelude::*;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `IntoParallelRefIterator` and `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:20:19
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                   ^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Duration` and `SystemTime`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^  ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/bin/search_client.rs:24:9
[INFO] [stdout]    |
[INFO] [stdout] 24 |     let mut lf_buffer = fs::read("lf.bincode")?;
[INFO] [stdout]    |         ----^^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `original_string`
[INFO] [stdout]   --> src/bin/main.rs:80:9
[INFO] [stdout]    |
[INFO] [stdout] 80 |     let original_string = common::suffix_array::reverse_bwt(&lf.Index);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_original_string`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `g`
[INFO] [stdout]    --> src/bin/main.rs:108:9
[INFO] [stdout]     |
[INFO] [stdout] 108 |     let g = bincode::serialize_into(&mut lf_buffer, &lf);
[INFO] [stdout]     |         ^ help: if this is intentional, prefix it with an underscore: `_g`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `suffix_strings`
[INFO] [stdout]    --> src/bin/main.rs:131:9
[INFO] [stdout]     |
[INFO] [stdout] 131 |     let suffix_strings: Vec<&str> = (positions.1).iter().map(|x| {
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_suffix_strings`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/main.rs:36:9
[INFO] [stdout]    |
[INFO] [stdout] 36 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/all_in_one.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/bin/main.rs:109:5
[INFO] [stdout]     |
[INFO] [stdout] 109 |     lf_buffer.flush();
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 109 |     let _ = lf_buffer.flush();
[INFO] [stdout]     |     +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/all_in_one.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]   --> src/bin/all_in_one.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::io::Read;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fibonacci` is never used
[INFO] [stdout]   --> src/benches/my_benchmark.rs:20:4
[INFO] [stdout]    |
[INFO] [stdout] 20 | fn fibonacci(n: u64) -> u64 {
[INFO] [stdout]    |    ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]   --> src/bin/all_in_one.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::fs::File;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:57:13
[INFO] [stdout]    |
[INFO] [stdout] 57 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:74:13
[INFO] [stdout]    |
[INFO] [stdout] 74 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:45:9
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]   --> src/bin/all_in_one.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::prelude::*;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/all_in_one.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/bin/all_in_one.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/all_in_one.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/all_in_one.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/all_in_one.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/all_in_one.rs:20:44
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/all_in_one.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::IndexedParallelIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 | use rayon::iter::IndexedParallelIterator;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::ParallelIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use rayon::iter::ParallelIterator;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:39:9
[INFO] [stdout]    |
[INFO] [stdout] 39 |     for i in 0 .. index.len() {
[INFO] [stdout]    |         ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:63:9
[INFO] [stdout]    |
[INFO] [stdout] 63 |     let mut stripped = contents.replace('\n', "");
[INFO] [stdout]    |         ----^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `final_char`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let final_char = stripped.chars().last().expect("Something went wrong when getting the last character. Does the file have conten...
[INFO] [stdout]    |         ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_final_char`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `criterion_benchmark` is never used
[INFO] [stdout]   --> src/benches/my_benchmark.rs:28:4
[INFO] [stdout]    |
[INFO] [stdout] 28 | fn criterion_benchmark(c: &mut Criterion) {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `sa_benchmark` is never used
[INFO] [stdout]   --> src/benches/my_benchmark.rs:32:4
[INFO] [stdout]    |
[INFO] [stdout] 32 | fn sa_benchmark(c: &mut Criterion) {
[INFO] [stdout]    |    ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `reverse_benchmark` is never used
[INFO] [stdout]   --> src/benches/my_benchmark.rs:60:4
[INFO] [stdout]    |
[INFO] [stdout] 60 | fn reverse_benchmark(c: &mut Criterion) {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `parallel_search_benchmark` is never used
[INFO] [stdout]   --> src/benches/my_benchmark.rs:94:4
[INFO] [stdout]    |
[INFO] [stdout] 94 | fn parallel_search_benchmark(c: &mut Criterion) {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `sarr_benchmark` is never used
[INFO] [stdout]    --> src/benches/my_benchmark.rs:107:4
[INFO] [stdout]     |
[INFO] [stdout] 107 | fn sarr_benchmark(c: &mut Criterion) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/benches/my_benchmark.rs:62:9
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/benches/my_benchmark.rs:76:9
[INFO] [stdout]    |
[INFO] [stdout] 76 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> src/bin/all_in_one.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/all_in_one.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]   --> src/bin/all_in_one.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::io::Read;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]   --> src/bin/all_in_one.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::fs::File;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]   --> src/bin/all_in_one.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::io::prelude::*;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]   --> src/bin/all_in_one.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 | use std::iter::repeat;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]   --> src/bin/all_in_one.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::collections::HashMap;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]   --> src/bin/all_in_one.rs:15:5
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::collections::HashSet;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/all_in_one.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/all_in_one.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `IntoParallelRefMutIterator`
[INFO] [stdout]   --> src/bin/all_in_one.rs:20:44
[INFO] [stdout]    |
[INFO] [stdout] 20 | use rayon::iter::{IntoParallelRefIterator, IntoParallelRefMutIterator};
[INFO] [stdout]    |                                            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/all_in_one.rs:23:17
[INFO] [stdout]    |
[INFO] [stdout] 23 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::IndexedParallelIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 | use rayon::iter::IndexedParallelIterator;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `rayon::iter::ParallelIterator`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 22 | use rayon::iter::ParallelIterator;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:70:19
[INFO] [stdout]    |
[INFO] [stdout] 70 | pub fn generate_l(T: &str) -> Vec<Nuc> {
[INFO] [stdout]    |                   ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:73:9
[INFO] [stdout]    |
[INFO] [stdout] 73 |     let L: Vec<Nucleotide> = T.as_bytes().iter().map(|c| {
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:80:19
[INFO] [stdout]    |
[INFO] [stdout] 80 | pub fn generate_f(T: &str) -> Vec<Nuc> {
[INFO] [stdout]    |                   ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:83:13
[INFO] [stdout]    |
[INFO] [stdout] 83 |     let mut F: Vec<Nucleotide> = T.as_bytes().iter().map(|c| {
[INFO] [stdout]    |             ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:101:9
[INFO] [stdout]     |
[INFO] [stdout] 101 |     let T = file_contents.as_str();
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:103:9
[INFO] [stdout]     |
[INFO] [stdout] 103 |     let L = generate_l(&T);
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:104:9
[INFO] [stdout]     |
[INFO] [stdout] 104 |     let F = generate_f(&T);
[INFO] [stdout]     |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:39:9
[INFO] [stdout]    |
[INFO] [stdout] 39 |     for i in 0 .. index.len() {
[INFO] [stdout]    |         ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Index` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:106:9
[INFO] [stdout]     |
[INFO] [stdout] 106 |     let Index: HashMap<Nucleotide, Nucleotide> = (0..T.len()).map(|i| {
[INFO] [stdout]     |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:63:9
[INFO] [stdout]    |
[INFO] [stdout] 63 |     let mut stripped = contents.replace('\n', "");
[INFO] [stdout]    |         ----^^^^^^^^
[INFO] [stdout]    |         |
[INFO] [stdout]    |         help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `final_char`
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let final_char = stripped.chars().last().expect("Something went wrong when getting the last character. Does the file have conten...
[INFO] [stdout]    |         ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_final_char`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:45:13
[INFO] [stdout]    |
[INFO] [stdout] 45 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:58:13
[INFO] [stdout]    |
[INFO] [stdout] 58 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:70:19
[INFO] [stdout]    |
[INFO] [stdout] 70 | pub fn generate_l(T: &str) -> Vec<Nuc> {
[INFO] [stdout]    |                   ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:73:9
[INFO] [stdout]    |
[INFO] [stdout] 73 |     let L: Vec<Nucleotide> = T.as_bytes().iter().map(|c| {
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:80:19
[INFO] [stdout]    |
[INFO] [stdout] 80 | pub fn generate_f(T: &str) -> Vec<Nuc> {
[INFO] [stdout]    |                   ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]   --> src/bin/bwt_rosalind.rs:83:13
[INFO] [stdout]    |
[INFO] [stdout] 83 |     let mut F: Vec<Nucleotide> = T.as_bytes().iter().map(|c| {
[INFO] [stdout]    |             ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:101:9
[INFO] [stdout]     |
[INFO] [stdout] 101 |     let T = file_contents.as_str();
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:103:9
[INFO] [stdout]     |
[INFO] [stdout] 103 |     let L = generate_l(&T);
[INFO] [stdout]     |         ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `original_string`
[INFO] [stdout]   --> src/bin/all_in_one.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let original_string = common::suffix_array::reverse_bwt(&lf.Index);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_original_string`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:104:9
[INFO] [stdout]     |
[INFO] [stdout] 104 |     let F = generate_f(&T);
[INFO] [stdout]     |         ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:75:13
[INFO] [stdout]    |
[INFO] [stdout] 75 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Index` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:106:9
[INFO] [stdout]     |
[INFO] [stdout] 106 |     let Index: HashMap<Nucleotide, Nucleotide> = (0..T.len()).map(|i| {
[INFO] [stdout]     |         ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/all_in_one.rs:35:9
[INFO] [stdout]    |
[INFO] [stdout] 35 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `ROSALIND_TEST_TRUE` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:125:8
[INFO] [stdout]     |
[INFO] [stdout] 125 |     fn ROSALIND_TEST_TRUE() {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `rosalind_test_true`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:126:13
[INFO] [stdout]     |
[INFO] [stdout] 126 |         let T = "TTCCTAACG$A";
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `t`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `L` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:127:13
[INFO] [stdout]     |
[INFO] [stdout] 127 |         let L = generate_l(&T);
[INFO] [stdout]     |             ^ help: convert the identifier to snake case: `l`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `F` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:128:13
[INFO] [stdout]     |
[INFO] [stdout] 128 |         let F = generate_f(&T);
[INFO] [stdout]     |             ^ help: convert the identifier to snake case (notice the capitalization): `f`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `Index` should have a snake case name
[INFO] [stdout]    --> src/bin/bwt_rosalind.rs:129:13
[INFO] [stdout]     |
[INFO] [stdout] 129 |         let Index: HashMap<Nucleotide, Nucleotide> = (0..T.len()).map(|i| {
[INFO] [stdout]     |             ^^^^^ help: convert the identifier to snake case (notice the capitalization): `index`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:45:13
[INFO] [stdout]    |
[INFO] [stdout] 45 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:58:13
[INFO] [stdout]    |
[INFO] [stdout] 58 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `original_string`
[INFO] [stdout]   --> src/bin/all_in_one.rs:64:9
[INFO] [stdout]    |
[INFO] [stdout] 64 |     let original_string = common::suffix_array::reverse_bwt(&lf.Index);
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_original_string`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/all_in_one.rs:75:13
[INFO] [stdout]    |
[INFO] [stdout] 75 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/all_in_one.rs:35:9
[INFO] [stdout]    |
[INFO] [stdout] 35 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::io;
[INFO] [stdout]   |     ^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::Read`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:4:5
[INFO] [stdout]   |
[INFO] [stdout] 4 | use std::io::Read;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::fs::File;
[INFO] [stdout]   |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::prelude::*`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:6:5
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::io::prelude::*;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::iter::repeat`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::iter::repeat;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:8:5
[INFO] [stdout]   |
[INFO] [stdout] 8 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashSet`
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:9:5
[INFO] [stdout]   |
[INFO] [stdout] 9 | use std::collections::HashSet;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::str`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:10:5
[INFO] [stdout]    |
[INFO] [stdout] 10 | use std::str;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::mem`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::mem;
[INFO] [stdout]    |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::borrow::Borrow`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use std::borrow::Borrow;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Duration`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:15:17
[INFO] [stdout]    |
[INFO] [stdout] 15 | use std::time::{Duration, SystemTime};
[INFO] [stdout]    |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: `#[macro_use]` attribute cannot be used on use statements
[INFO] [stdout]  --> src/bin/comparative_benchmark.rs:1:1
[INFO] [stdout]   |
[INFO] [stdout] 1 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]   = help: `#[macro_use]` can be applied to crates, extern crates, and modules
[INFO] [stdout]   = note: `#[warn(unused_attributes)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:57:13
[INFO] [stdout]    |
[INFO] [stdout] 57 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `e`
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:74:13
[INFO] [stdout]    |
[INFO] [stdout] 74 |         Err(e) => {
[INFO] [stdout]    |             ^ help: if this is intentional, prefix it with an underscore: `_e`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `T` should have a snake case name
[INFO] [stdout]   --> src/bin/comparative_benchmark.rs:45:9
[INFO] [stdout]    |
[INFO] [stdout] 45 |     let T = file_contents.as_str();
[INFO] [stdout]    |         ^ help: convert the identifier to snake case: `t`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 17.55s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: criterion v0.2.11
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "7604da3d1152510086dfb9c89be7040660e6b04fb2c252fac4b251233e1b794b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7604da3d1152510086dfb9c89be7040660e6b04fb2c252fac4b251233e1b794b", kill_on_drop: false }`
[INFO] [stdout] 7604da3d1152510086dfb9c89be7040660e6b04fb2c252fac4b251233e1b794b
